【发布时间】：2014-03-15 02:05:33
【问题描述】：
我在 Ubuntu 12.04.4 LTS 上安装 R 2.15.3 的 reshape2 包时遇到问题。我决定不升级到 R 3.x，因为我使用的许多软件包尚未升级以支持新版本。
当我尝试在 Ubuntu 12.04.4 LTS 上使用 R 2.15.3 安装 reshape2 时，我得到以下信息。
> install.packages("reshape2")
Installing package(s) into â/usr/local/lib/R/site-libraryâ
(as âlibâ is unspecified)
Warning in install.packages("reshape2") :
'lib = "/usr/local/lib/R/site-library"' is not writable
Would you like to use a personal library instead? (y/n) y
Would you like to create a personal library
~/R/x86_64-pc-linux-gnu-library/2.15
to install packages into? (y/n) y
Warning: dependency âRcppâ is not available
also installing the dependencies âplyrâ, âstringrâ
trying URL 'http://cran.cs.wwu.edu/src/contrib/plyr_1.8.1.tar.gz'
Content type 'application/x-gzip' length 393233 bytes (384 Kb)
opened URL
==================================================
downloaded 384 Kb
trying URL 'http://cran.cs.wwu.edu/src/contrib/stringr_0.6.2.tar.gz'
Content type 'application/x-gzip' length 20636 bytes (20 Kb)
opened URL
==================================================
downloaded 20 Kb
trying URL 'http://cran.cs.wwu.edu/src/contrib/reshape2_1.2.2.tar.gz'
Content type 'application/x-gzip' length 27220 bytes (26 Kb)
opened URL
==================================================
downloaded 26 Kb
ERROR: dependency âRcppâ is not available for package âplyrâ
* removing â/home/ubuntu/R/x86_64-pc-linux-gnu-library/2.15/plyrâ
* installing *source* package âstringrâ ...
** package âstringrâ successfully unpacked and MD5 sums checked
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (stringr)
ERROR: dependency âplyrâ is not available for package âreshape2â
* removing â/home/ubuntu/R/x86_64-pc-linux-gnu-library/2.15/reshape2â
The downloaded source packages are in
â/tmp/RtmpxP5OIc/downloaded_packagesâ
Warning messages:
1: In install.packages("reshape2") :
installation of package âplyrâ had non-zero exit status
2: In install.packages("reshape2") :
installation of package âreshape2â had non-zero exit status
>
然后我尝试安装缺少的 Rcpp，但收到错误消息：
Warning message:
package âRcppâ is not available (for R version 2.15.3)
我又搜索了一些，发现 Rcpp 现在需要 R 版本 3.x，但有一个向后兼容的 RcppClassic 版本。
尝试安装 RcppClassic 时，我得到：
Installing package(s) into â/home/ubuntu/R/x86_64-pc-linux-gnu-library/2.15â
(as âlibâ is unspecified)
Warning: dependency âRcppâ is not available
trying URL 'http://cran.cs.wwu.edu/src/contrib/RcppClassic_0.9.5.tar.gz'
Content type 'application/x-gzip' length 185057 bytes (180 Kb)
opened URL
==================================================
downloaded 180 Kb
ERROR: dependency âRcppâ is not available for package âRcppClassicâ
* removing â/home/ubuntu/R/x86_64-pc-linux-gnu-library/2.15/RcppClassicâ
The downloaded source packages are in
â/tmp/RtmpxP5OIc/downloaded_packagesâ
Warning message:
In install.packages("RcppClassic") :
installation of package âRcppClassicâ had non-zero exit status
然后我尝试并能够使用“sudo apt-get install r-cran-rcpp”安装 Rcpp：
$ sudo apt-get install r-cran-rcpp
Reading package lists... Done
Building dependency tree
Reading state information... Done
The following packages were automatically installed and are no longer required:
libgudev-1.0-0 gir1.2-gudev-1.0
Use 'apt-get autoremove' to remove them.
The following extra packages will be installed:
littler r-cran-int64
Suggested packages:
r-cran-getopt r-cran-inline
The following NEW packages will be installed:
littler r-cran-int64 r-cran-rcpp
0 upgraded, 3 newly installed, 0 to remove and 3 not upgraded.
Need to get 2,899 kB of archives.
After this operation, 11.2 MB of additional disk space will be used.
Do you want to continue [Y/n]? Y
Get:1 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/universe littler amd64 0.1.5-1 [32.2 kB]
Get:2 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/universe r-cran-int64 amd64 1.1.2-1 [359 kB]
Get:3 http://us-west-2.ec2.archive.ubuntu.com/ubuntu/ precise/universe r-cran-rcpp amd64 0.9.9-1 [2,508 kB]
Fetched 2,899 kB in 0s (8,959 kB/s)
Selecting previously unselected package littler.
(Reading database ... 60157 files and directories currently installed.)
Unpacking littler (from .../littler_0.1.5-1_amd64.deb) ...
Selecting previously unselected package r-cran-int64.
Unpacking r-cran-int64 (from .../r-cran-int64_1.1.2-1_amd64.deb) ...
Selecting previously unselected package r-cran-rcpp.
Unpacking r-cran-rcpp (from .../r-cran-rcpp_0.9.9-1_amd64.deb) ...
Processing triggers for man-db ...
Setting up littler (0.1.5-1) ...
Setting up r-cran-int64 (1.1.2-1) ...
Setting up r-cran-rcpp (0.9.9-1) ...
但是当我尝试在 R 中安装“reshape2”时，我收到了与以前相同的错误消息。
我不明白为什么我会收到错误消息：
Warning: dependency âRcppâ is not available
因为 'sudo apt-get install r-cran-rcpp' 工作
经过一番搜索，我在这里找到了关于如何使用 RcppClassic 的小插图：http://cran.r-project.org/web/packages/RcppClassic/vignettes/RcppClassic-intro.pdf
但是，对DESCRIPTION、NAMESPACE 和 MAKEVAR 文件进行修改开始超出我的能力范围，因此我正在寻求帮助。
这是 sessionInfo() 的输出：
> sessionInfo()
R version 2.15.3 (2013-03-01)
Platform: x86_64-pc-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8
[5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
[7] LC_PAPER=C LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] stats graphics grDevices utils datasets methods base
提前致谢！
编辑 3/15/2014： 我的“用例”是我在 AWS EC2 实例上运行一系列定期作业，因此我不需要最新/最强大的软件功能。我在我的 Mac 开发机器上使用 R 2.15 可以正常工作，所以我只是想将我拥有的东西移植到我的 AWS EC2 Ubuntu 实例中。
我使用的包是：reshape2、xlsx（和 xlsxjars）、RJSONIO、stringr、R2HTML、RCurl、plots、lattice、latticeExtra、gdata 和 ggplot2。
【问题讨论】：
-
我认为 reshape2 包含在默认的 R 安装中。
-
@Fernando，这是不正确的。 Marc471，您使用的哪些包不适用于 R 3.x？
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@Ananda 对不起，我不知道……但我总是需要（reshape2），从不 install.packages（'reshape2'）。在 linux 和 Mac OSX 上都可以。
-
@Fernando，它很可能是在您安装另一个需要它的软件包时安装的。
-
@AnandaMahto 很高兴知道谢谢！我一直认为 reshape2 是默认出现的。
标签： r ubuntu-12.04 plyr rcpp reshape2