【问题标题】:Q: Capture dimensions of transformer array for pipeline问:捕获管道变压器阵列的尺寸
【发布时间】:2018-04-26 20:51:29
【问题描述】:

我想使用keras sklearn wrapper 创建一个sklearn 管道。我正在尝试使用aclimdb, aka large movie dataset 进行情绪分类任务,我已将其转换为两列的熊猫数据框,一列用于评论(字符串),一列用于标签(整数)。

> df.head(4)
                                              review  sentiment
0  "Lifeforce" is a truly bizarre adaptation of t...          1
1  I ordered this movie on the Internet as it is ...          0
2  he was my hero for all time until he went alon...          0
3  This is a 'sleeper'. It defines Nicholas Cage....          1

我有一个管道,它使用CountVectorizer 对评论进行标记,使用TfidfTransformer 应用tfidf 转换,然后使用KerasClassifier 和下面的model 函数拟合二元分类模型:

X_train = df.loc[1:25000, "review"]
y_train = df.loc[1:25000, 'sentiment'].values
X_test = df.loc[25000:, "review"]
y_test = df.loc[25000:, 'sentiment'].values


np.random.seed(123) # for reproducibility

def model():
    model = models.Sequential([
        layers.Dense(16, input_shape = (10**4,), activation='relu'),
        layers.Dropout(0.5),
        layers.Dense(16, activation='relu'),
        layers.Dropout(0.5),
        layers.Dense(1, activation='sigmoid')
    ])
    model.compile(loss='binary_crossentropy', optimizer='rmsprop', 
                  metrics=['accuracy'])
    return model


early_stopping = callbacks.EarlyStopping(monitor='val_loss', patience=1, verbose=0, mode='auto')

pipe = pipeline.Pipeline([
    ('vect', CountVectorizer(max_features=10**4)),
    ('tfidf', TfidfTransformer()),
    ('nn', KerasClassifier(build_fn=model, 
                           nb_epoch=10, batch_size=128,
                           validation_split=0.2, callbacks=[early_stopping]))
])

为了完成这项工作,我必须为 keras 模型指定 input_shape,这意味着我必须修复 CountVectorizermax_features 的值。我不想这样做。

有没有办法从前一个管道阶段获得输出的维度,在这种情况下,TfidfTransformer 并将其传递给KerasClassifier?即,像这样:

def model(input_df):
    model = models.Sequential([
        layers.Dense(16, input_shape = input_df.shape, activation='relu'),
        layers.Dropout(0.5),
        layers.Dense(16, activation='relu'),
        layers.Dropout(0.5),
        layers.Dense(1, activation='sigmoid')
    ])
    model.compile(loss='binary_crossentropy', optimizer='rmsprop', 
                  metrics=['accuracy'])
    return model
​
​
early_stopping = callbacks.EarlyStopping(monitor='val_loss', patience=1, verbose=0, mode='auto')
​
pipe = pipeline.Pipeline([
#    ('vect', CountVectorizer(max_features=10**4)),
#    ('tfidf', TfidfTransformer()),
    ('tfidf', TfidfVectorizer(max_features=10**4)),
    ('nn', KerasClassifier(build_fn=model(input_df=tfidf), 
                           nb_epoch=10, batch_size=128,
                           validation_split=0.2, callbacks=[early_stopping]))
])
​
## train network pipeline
​
pipe.fit(X_train.values, y_train)
​
-------------------------------------------------------------------
NameError                         Traceback (most recent call last)
<ipython-input-6-21be14eb185d> in <module>()
     19 #    ('tfidf', TfidfTransformer()),
     20     ('tfidf', TfidfVectorizer(max_features=10**4)),
---> 21     ('nn', KerasClassifier(build_fn=model(input_df=tfidf), 
     22                            nb_epoch=10, batch_size=128,
     23                            validation_split=0.2, callbacks=[early_stopping]))

NameError: name 'tfidf' is not defined

我可以将管道分成两个步骤,然后保存两个转换器的输出数据帧,这样我可以轻松捕获形状,但我宁愿一次性完成。

系统信息:

print(platform.platform())
print("Python", sys.version)
print("NumPy", np.__version__)
print("SciPy", scipy.__version__)
print("Scikit-Learn", sklearn.__version__)
print("Keras Backend", os.getenv("KERAS_BACKEND")) # doesn't work with tf https://github.com/fchollet/keras/issues/4984
​
Linux-4.4.0-91-generic-x86_64-with-debian-stretch-sid
Python 3.5.3 |Anaconda custom (64-bit)| (default, Mar  6 2017, 11:58:13) 
[GCC 4.4.7 20120313 (Red Hat 4.4.7-1)]
NumPy 1.13.3
SciPy 0.19.1
Scikit-Learn 0.19.0
Keras Backend cntk

谢谢!

【问题讨论】:

    标签: python machine-learning keras scikit-learn


    【解决方案1】:

    为了解决这个问题,你必须:

    • 从模型中移除 input_shape

    • 为 sklearnpipeline 定义一个自定义的 ArrayTransformer

    • 在 tfidf/counter 和 keras 模型之间插入这个新的转换器

    在您的代码中:

    def model():
        model = models.Sequential([
           layers.Dense(16, activation='relu'),
           layers.Dropout(0.5),
           layers.Dense(16, activation='relu'),
           layers.Dropout(0.5),
           layers.Dense(1, activation='sigmoid')
        ])
        model.compile(loss='binary_crossentropy', optimizer='rmsprop', 
                      metrics=['accuracy'])
        return model
    
    
    class ArrayTransformer():
    
       def transform(self, X, **transform_params):
           return X.toarray()
    
       def fit(self, X, y=None, **fit_params):
           return self
    
    
    early_stopping = callbacks.EarlyStopping(monitor='val_loss', patience=1, verbose=0, 
    mode='auto')
    
    pipe = pipeline.Pipeline([
         ('tfidf', TfidfVectorizer(max_features=XXX)),
         ('transformer', ArrayTransformer()),
         ('nn', KerasClassifier(build_fn=model, 
                           nb_epoch=10, batch_size=128,
                           validation_split=0.2, callbacks=[early_stopping]))
       ])
    
    pipe.fit(X_train.values, y_train)
    

    通过这种方式,您还可以将 tfidf/counter 与 GridSearchCV 结合并调整 min_df、max_features...

    【讨论】:

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