【发布时间】:2017-01-12 16:44:27
【问题描述】:
我正在尝试在 R 中使用 cplexAPI。我遇到了持续性错误。我正在使用 Microsoft R Open 3.3.1 并在 Windows 10 上安装了 IBM ILOG CPLEX Optimization Studio 版本:12.7.0.0。这是我所做的,以及结果。我将详细说明,希望您能在某处看到我的错误!
- 将 tar 文件解压到我桌面上的文件夹中。
- 编辑文件:
C:\Users\zejas\Desktop\cplexAPI\cplexAPI\src\Makevars.win说:
PKG_CPPFLAGS=-g -D_R_=1 -DUSE_R=1 -I"$C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include"
PKG_LIBS=-L"$C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\lib" -lm -lcplex1270
- Microsoft 对
Reviron.site文件进行了自己的修改。他们将Rcmd_environ放入:C:\Program Files\Microsoft\MRO-3.3.1\etc\Rcmd_environ在该文件中,我添加了底部三行:
## from R.sh
R_SHARE_DIR=${R_HOME}/share
R_INCLUDE_DIR=${R_HOME}/include
R_DOC_DIR=${R_HOME}/doc
R_ARCH=
## from Rcmd
R_OSTYPE=windows
TEXINPUTS=.;${TEXINPUTS};${R_SHARE_DIR}/texmf/tex/latex;
BIBINPUTS=.;${BIBINPUTS};${R_SHARE_DIR}/texmf/bibtex/bib;
BSTINPUTS=.;${BSTINPUTS};${R_SHARE_DIR}/texmf/bibtex/bst;
## from etc/Renviron
# R_PLATFORM='i386-pc-mingw32'
R_PAPERSIZE_USER=${R_PAPERSIZE}
R_PAPERSIZE=${R_PAPERSIZE-'a4'}
# for Rd2dpf, reference manual
R_RD4PDF=${R_RD4PDF-'times,inconsolata,hyper'}
## used for options("texi2dvi")
# R_TEXI2DVICMD=${R_TEXI2DVICMD-${TEXI2DVI-'texi2dvi'}}
## used by INSTALL, check, build
R_GZIPCMD=${R_GZIPCMD-'gzip'}
## Default zip/unzip commands
R_UNZIPCMD=${R_UNZIPCMD-'unzip'}
R_ZIPCMD=${R_ZIPCMD-'zip'}
R_BZIPCMD=${R_BZIPCMD-'bzip2'}
## Default browser
# R_BROWSER=${R_BROWSER-'open'}
## Default editor
# EDITOR=${EDITOR-${VISUAL-vi}}
## Default pager
# PAGER=${PAGER-''}
## Default PDF viewer
# R_PDFVIEWER=${R_PDFVIEWER-'open'}
# MAKE=${MAKE-make}
SED=${SED-sed}
#
CPLEX_STUDIO_DIR=C:/Program Files/IBM/ILOG/CPLEX_Studio127
CPLEX_STUDIO_LIB=C:/Program Files/IBM/ILOG/CPLEX_Studio127/cplex/bin/x64_win64
- 在
Environment VariablesSystem VariablesPath我已经添加了:
%CPLEX_STUDIO_BINARIES127%;
C:\Program Files (x86)\Intel\OpenCL SDK\6.1\bin\x64;
C:\Program Files (x86)\Intel\OpenCL SDK\6.1\bin\x86;
C:\Program Files (x86)\Intel\OpenCL SDK\6.1\bin\Pin;
C:\Program Files (x86)\Intel\OpenCL SDK\6.1\bin\GTPin;
C:\ProgramData\Oracle\Java\javapath;C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v8.0\bin;
C:\Program Files\NVIDIA GPU Computing Toolkit\CUDA\v8.0\libnvvp;
C:\Program Files (x86)\Intel\iCLS Client\;C:\Program Files\Intel\iCLS Client\;
C:\Windows\system32;C:\Windows;C:\Windows\System32\Wbem;
C:\Windows\System32\WindowsPowerShell\v1.0\;
C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\DAL;
C:\Program Files\Intel\Intel(R) Management Engine Components\DAL;
C:\Program Files (x86)\Intel\Intel(R) Management Engine Components\IPT;
C:\Program Files\Intel\Intel(R) Management Engine Components\IPT;
C:\Program Files (x86)\Skype\Phone\;
C:\Program Files\MATLAB\R2016b\bin;
C:\Program Files\MATLAB\R2016a\bin;
C:\Program Files\Microsoft\MRO-3.3.1\bin\x64;
C:\Users\zejas\.dnx\bin;C:\Program Files\Microsoft DNX\Dnvm\;
C:\Program Files\Microsoft SQL Server\130\Tools\Binn\;
C:\Program Files (x86)\Windows Kits\8.1\Windows Performance Toolkit\;
C:\WINDOWS\system32;C:\WINDOWS;
C:\WINDOWS\System32\Wbem;
C:\WINDOWS\System32\WindowsPowerShell\v1.0\;
C:\Program Files (x86)\NVIDIA Corporation\PhysX\Common;
C:\Program Files\Git\cmd;
C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\bin\x64_win64;
C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include;
C:\Rtools\bin
- 我重建了包:
C:\Users\zejas>R CMD build --no-build-vignettes --no-manual --md5 C:\Users\zejas\Desktop\cplexAPI\cplexAPI
* checking for file 'C:\Users\zejas\Desktop\cplexAPI\cplexAPI/DESCRIPTION' ... OK
* preparing 'cplexAPI':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking vignette meta-information ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* adding MD5 file
* building 'cplexAPI_1.3.2.tar.gz'
Warning: file 'cplexAPI/cleanup' did not have execute permissions: corrected
Warning: file 'cplexAPI/configure' did not have execute permissions: corrected
- 我尝试安装软件包:
C:\Users\zejas>"C:\Program Files\Microsoft\MRO-3.3.1\bin\x64\R.exe" CMD INSTALL --build --no-multiarch ./cplexAPI.tar.gz
* installing to library 'C:/Users/zejas/Documents/R/win-library/3.3'
* installing *source* package 'cplexAPI' ...
** package 'cplexAPI' successfully unpacked and MD5 sums checked
** libs
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I":\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include" -I"C:/swarm/workspace/External- R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cplexAPI.c -o cplexAPI.o
In file included from cplexAPI.h:26:0, from cplexAPI.c:26:
cplexR.h:50:27: fatal error: ilcplex/cplex.h: No such file or directory
#include <ilcplex/cplex.h>
^
compilation terminated.
make: *** [cplexAPI.o] Error 1
Warning: running command 'make -f "Makevars.win" -f "C:/PROGRA~1/MICROS~1/MRO-33~1.1/etc/x64/Makeconf" -f "C:/PROGRA~1/MICROS~1/MRO- 33~1.1/share/make/winshlib.mk" SHLIB="cplexAPI.dll" WIN=64 TCLBIN=64 OBJECTS="cplexAPI.o cplexR.o cplex_checkAPI.o cplex_longparamAPI.o init.o"' had status 2
ERROR: compilation failed for package 'cplexAPI'
* removing 'C:/Users/zejas/Documents/R/win-library/3.3/cplexAPI'
该目录中绝对有一个cplex.h 文件!
C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include\ilcplex>dir
Volume in drive C is OS
Volume Serial Number is 0A1B-3F26
Directory of C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include\ilcplex
01/09/2017 10:43 AM <DIR> .
01/09/2017 10:43 AM <DIR> ..
01/09/2017 10:43 AM 2,499 annotation.xsd
01/09/2017 10:43 AM 72,321 cplex.h
01/09/2017 10:43 AM 6,429 cplexcheck.h
01/09/2017 10:43 AM 1,703 cplexdistmip.h
01/09/2017 10:43 AM 1,857 cplexdistmipl.h
01/09/2017 10:43 AM 1,857 cplexdistmips.h
01/09/2017 10:43 AM 2,569 cplexdistmipx.h
01/09/2017 10:43 AM 76,659 cplexl.h
01/09/2017 10:43 AM 2,826 cplexremote.h
01/09/2017 10:43 AM 2,944 cplexremotel.h
01/09/2017 10:43 AM 111,312 cplexremotemaster.h
01/09/2017 10:43 AM 107,895 cplexremotemasterl.h
01/09/2017 10:43 AM 107,777 cplexremotemasters.h
01/09/2017 10:43 AM 220,496 cplexremotemasterx.h
01/09/2017 10:43 AM 2,944 cplexremotes.h
01/09/2017 10:43 AM 3,379 cplexremoteworker.h
01/09/2017 10:43 AM 3,505 cplexremoteworkerl.h
01/09/2017 10:43 AM 3,511 cplexremoteworkers.h
01/09/2017 10:43 AM 4,554 cplexremoteworkerx.h
01/09/2017 10:43 AM 3,289 cplexremotex.h
01/09/2017 10:43 AM 76,354 cplexs.h
01/09/2017 10:43 AM 119,712 cplexx.h
01/09/2017 10:43 AM 70,061 cpxconst.h
01/09/2017 10:43 AM 675 ilm.h
01/09/2017 10:43 AM 7,158 ilocarray.h
01/09/2017 10:43 AM 186,959 ilocplex.h
01/09/2017 10:43 AM 205,973 ilocplexi.h
01/09/2017 10:43 AM 13,174 iloextrmgr.h
01/09/2017 10:43 AM 13,496 ilogoals.h
01/09/2017 10:43 AM 15,241 iloparam.h
01/09/2017 10:43 AM 5,705 solution.xsd
01/09/2017 10:43 AM 5,504 solution.xsl
01/09/2017 10:43 AM 1,397 vmc.dtd
01/09/2017 10:43 AM 2,837 vmc.xsd
34 File(s) 1,464,572 bytes
2 Dir(s) 333,053,566,976 bytes free
有什么想法吗?
使用来自 @c0bra 和 @rkersh 的输入进行更新
我更新Makevars.win:
PKG_CPPFLAGS=-g -D_R_=1 -DUSE_R=1 -I"C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include"
PKG_LIBS=-L"C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\lib" -lm -lcplex1270
在命令行重建:
C:\Users\zejas>R CMD build --no-build-vignettes --no-manual --md5 C:\Users\zejas\Desktop\cplexAPI\cplexAPI
* checking for file 'C:\Users\zejas\Desktop\cplexAPI\cplexAPI/DESCRIPTION' ... OK
* preparing 'cplexAPI':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking vignette meta-information ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* adding MD5 file
* building 'cplexAPI_1.3.2.tar.gz'
Warning: file 'cplexAPI/cleanup' did not have execute permissions: corrected
Warning: file 'cplexAPI/configure' did not have execute permissions: corrected
我尝试从命令行安装:
C:\Users\zejas>"C:\Program Files\Microsoft\MRO-3.3.1\bin\x64\R.exe" CMD INSTALL --build --no-multiarch .\cplexAPI_1.3.2.tar.gz
* installing to library 'C:/Users/zejas/Documents/R/win-library/3.3'
* installing *source* package 'cplexAPI' ...
** package 'cplexAPI' successfully unpacked and MD5 sums checked
** libs
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I"C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include" -I"C:/swarm/workspace/External-R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cplexAPI.c -o cplexAPI.o
cplexAPI.c: In function 'addChannel':
cplexAPI.c:5198:5: warning: implicit declaration of function 'CPXaddchannel' [-Wimplicit-function-declaration]
newch = CPXaddchannel(R_ExternalPtrAddr(env));
^
cplexAPI.c:5198:11: warning: assignment makes pointer from integer without a cast
newch = CPXaddchannel(R_ExternalPtrAddr(env));
^
cplexAPI.c: In function 'delChannel':
cplexAPI.c:5234:5: warning: implicit declaration of function 'CPXdelchannel' [-Wimplicit-function-declaration]
CPXdelchannel(R_ExternalPtrAddr(env), &delch);
^
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I"C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include" -I"C:/swarm/workspace/External-R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cplexR.c -o cplexR.o
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I"C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include" -I"C:/swarm/workspace/External-R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cplex_checkAPI.c -o cplex_checkAPI.o
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I"C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include" -I"C:/swarm/workspace/External-R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cplex_longparamAPI.c -o cplex_longparamAPI.o
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I"C:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\include" -I"C:/swarm/workspace/External-R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
c:/Rtools/mingw_64/bin/gcc -m64 -shared -s -static-libgcc -o cplexAPI.dll tmp.def cplexAPI.o cplexR.o cplex_checkAPI.o cplex_longparamAPI.o init.o -LC:\Program Files\IBM\ILOG\CPLEX_Studio127\cplex\lib -lm -lcplex1270 -LC:/swarm/workspace/External-R-3.3.1/vendor/extsoft/lib/x64 -LC:/swarm/workspace/External-R-3.3.1/vendor/extsoft/lib -LC:/PROGRA~1/MICROS~1/MRO-33~1.1/bin/x64 -lR
C:/Rtools/mingw_64/bin/../lib/gcc/x86_64-w64-mingw32/4.9.3/../../../../x86_64-w64-mingw32/bin/ld.exe: cannot find -lcplex1270
collect2.exe: error: ld returned 1 exit status
no DLL was created
ERROR: compilation failed for package 'cplexAPI'
* removing 'C:/Users/zejas/Documents/R/win-library/3.3/cplexAPI'
我编辑 Makevars.win
PKG_CPPFLAGS=-g -D_R_=1 -DUSE_R=1 -I"C:/PROGRA~1/IBM/ILOG/CPLEX_Studio127/cplex/include"
PKG_LIBS=-L"C:/PROGRA~1/IBM/ILOG/CPLEX_Studio127/cplex/include/lib" -lm -lcplex1270
我重建:
C:\Users\zejas>R CMD build --no-build-vignettes --no-manual --md5 C:\Users\zejas\Desktop\cplexAPI\cplexAPI
* checking for file 'C:\Users\zejas\Desktop\cplexAPI\cplexAPI/DESCRIPTION' ... OK
* preparing 'cplexAPI':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* checking vignette meta-information ... OK
* checking for LF line-endings in source and make files
* checking for empty or unneeded directories
* adding MD5 file
* building 'cplexAPI_1.3.2.tar.gz'
Warning: file 'cplexAPI/cleanup' did not have execute permissions: corrected
Warning: file 'cplexAPI/configure' did not have execute permissions: corrected
我尝试安装:
C:\Users\zejas>"C:\Program Files\Microsoft\MRO-3.3.1\bin\x64\R.exe" CMD INSTALL --build --no-multiarch .\cplexAPI_1.3.2.tar.gz
* installing to library 'C:/Users/zejas/Documents/R/win-library/3.3'
* installing *source* package 'cplexAPI' ...
** package 'cplexAPI' successfully unpacked and MD5 sums checked
** libs
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I"C:/PROGRA~1/IBM/ILOG/CPLEX_Studio127/cplex/include" -I"C:/swarm/workspace/External-R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cplexAPI.c -o cplexAPI.o
cplexAPI.c: In function 'addChannel':
cplexAPI.c:5198:5: warning: implicit declaration of function 'CPXaddchannel' [-Wimplicit-function-declaration]
newch = CPXaddchannel(R_ExternalPtrAddr(env));
^
cplexAPI.c:5198:11: warning: assignment makes pointer from integer without a cast
newch = CPXaddchannel(R_ExternalPtrAddr(env));
^
cplexAPI.c: In function 'delChannel':
cplexAPI.c:5234:5: warning: implicit declaration of function 'CPXdelchannel' [-Wimplicit-function-declaration]
CPXdelchannel(R_ExternalPtrAddr(env), &delch);
^
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I"C:/PROGRA~1/IBM/ILOG/CPLEX_Studio127/cplex/include" -I"C:/swarm/workspace/External-R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cplexR.c -o cplexR.o
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I"C:/PROGRA~1/IBM/ILOG/CPLEX_Studio127/cplex/include" -I"C:/swarm/workspace/External-R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cplex_checkAPI.c -o cplex_checkAPI.o
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I"C:/PROGRA~1/IBM/ILOG/CPLEX_Studio127/cplex/include" -I"C:/swarm/workspace/External-R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c cplex_longparamAPI.c -o cplex_longparamAPI.o
c:/Rtools/mingw_64/bin/gcc -m64 -I"C:/PROGRA~1/MICROS~1/MRO-33~1.1/include" -DNDEBUG -g -D_R_=1 -DUSE_R=1 -I"C:/PROGRA~1/IBM/ILOG/CPLEX_Studio127/cplex/include" -I"C:/swarm/workspace/External-R-3.3.1/vendor/extsoft/include" -O2 -Wall -std=gnu99 -mtune=core2 -c init.c -o init.o
c:/Rtools/mingw_64/bin/gcc -m64 -shared -s -static-libgcc -o cplexAPI.dll tmp.def cplexAPI.o cplexR.o cplex_checkAPI.o cplex_longparamAPI.o init.o -LC:/PROGRA~1/IBM/ILOG/CPLEX_Studio127/cplex/include/lib -lm -lcplex1270 -LC:/swarm/workspace/External-R-3.3.1/vendor/extsoft/lib/x64 -LC:/swarm/workspace/External-R-3.3.1/vendor/extsoft/lib -LC:/PROGRA~1/MICROS~1/MRO-33~1.1/bin/x64 -lR
C:/Rtools/mingw_64/bin/../lib/gcc/x86_64-w64-mingw32/4.9.3/../../../../x86_64-w64-mingw32/bin/ld.exe: cannot find -lcplex1270
collect2.exe: error: ld returned 1 exit status
no DLL was created
ERROR: compilation failed for package 'cplexAPI'
* removing 'C:/Users/zejas/Documents/R/win-library/3.3/cplexAPI'
这些是新错误!
【问题讨论】:
标签: r compilation cplex