利用AP算法进行聚类:

首先导入需要的包:

from sklearn.cluster import AffinityPropagation
from sklearn import metrics
from sklearn.datasets.samples_generator import make_blobs

 

生成一组数据:

centers = [[1, 1], [-1, -1], [1, -1]]
X, labels_true = make_blobs(n_samples=300, centers=centers, cluster_std=0.5, random_state=0)

 

以上代码包括3个类簇的中心点以及300个以这3个点为中心的样本点。

接下来要利用AP算法对这300个点进行聚类。

af = AffinityPropagation(preference=-50).fit(X) # preference采用负的欧氏距离
cluster_centers_indices = af.cluster_centers_indices_
labels = af.labels_  # 样本标签
n_clusters_ = len(cluster_centers_indices) # 类簇数

 

打印各种评价指标分数:

print('估计的类簇数: %d' % n_clusters_)
print('Homogeneity: %0.3f' % metrics.homogeneity_score(labels_true, labels))
print('Completeness: %0.3f' %metrics.completeness_score(labels_true, labels))
print('V-measure: %0.3f' %metrics.v_measure_score(labels_true, labels))
print('Adjusted Rand Index:%0.3f' %metrics.adjusted_rand_score(labels_true, labels))
print('Adjusted Mutual Information:%0.3f'%metrics.adjusted_mutual_info_score(labels_true, labels))
print('Silhouette Coefficient:%0.3f' %metrics.silhouette_score(X, labels, metric='sqeuclidean')) # sqeuclidean欧式距离平方

 

可视化聚类结果:

导入画图需要的包:

import matplotlib.pyplot as plt
from itertools import cycle
plt.close('all')  
plt.figure(1)
plt.clf() # 清除当前图的所有信息
colors = cycle('bgrcmykbgrcmykbgrcmykbgrcmyk')

close()方法介绍【可忽略】
close方法简介:

matplotlib.pyplot.close(*args)   --- Close a figure window.
close() by itself closes the current figure

close(fig) closes the Figure instance fig

close(num) closes the figure number num

close(name) where name is a string, closes figure with that label

close('all') closes all the figure windows
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