HISAT
wget ftp://ftp.ccb.jhu.edu/pub/infphilo/hisat2/downloads/hisat2-2.1.0-source.zip
unzip hisat2-2.1.0-source.zip
cd hisat2-2.1.0
make # 在此之前要安装g++和gcc，用sudo apt install 安装
rm -f *.h *.cpp
samtools
wget https://github.com/samtools/samtools/releases/download/1.5/samtools-1.5.tar.bz2
tar xvfj samtools-1.5.tar.bz2
cd samtools-1.5
./configure # 根据configure检测，安装系统依赖的模块，直到没有报错
make
sudo make install
HTSeq
# 安装依赖
sudo apt-get install python-pip
pip install --upgrade pip
sudo apt-get install build-essential python2.7-dev python-numpy python-matplotlib python-pysam python-htseq
pip install HTSeq