【问题标题】:SPARK : How to generate s3 file path dynamically using date diffSPARK:如何使用日期差异动态生成 s3 文件路径
【发布时间】:2016-10-18 03:54:44
【问题描述】:

我正在尝试获取 startDate 和 endDate 之间的文件列表并从这些文件夹中读取文件:

例如我的文件结构是这样的:BucketName/year/month/day/files

   s3://testBucket/2016/10/16/part00000

这些文件都是 jsons。问题是我需要加载 starDate 和 end Date 之间的所有路径:

开始日期(10/16/2016)和结束日期(09/16/2016)我想从 09/16/2016(含)...到 .... 10/16/ 2016(含)

    import org.joda.time.Days
    import org.joda.time.DurationFieldType
    import org.joda.time.LocalDate
    import org.joda.time.format.DateTimeFormat
    import org.joda.time.format.DateTimeFormatter

    val s3Bucket: String = "S3://myTestBucket/"

    val startTimestamp: String = "2016-09-16T00:00:00Z"
    val endTimestamp: String = "2016-10-16T00:00:00Z"

    val dtf: DateTimeFormatter = DateTimeFormat.forPattern( "yyyy-MMM-dd" )
    val startDate: LocalDate = dtf.parseLocalDate( startTimestamp )

    val endDate: LocalDate = dtf.parseLocalDate( endTimestamp )


    val days: Int = Days.daysBetween( startDate, endDate ).getDays

    System.out.print( days )

    val dates = new ListBuffer[String]()
    var i: Int = 0
    while (i < days) {
      {
        val d: LocalDate = startDate.withFieldAdded( DurationFieldType.days, i )
        val tempDate: String = s3Bucket + d.getYear + "/" + d.getMonthOfYear + "/" + d.getDayOfMonth + "/" + "*"
        dates += tempDate
      }
      {
        i += 1; 
      }
    }
    val dateList = dates.toList
    val files = dateList.mkString(", ")
    sqlContext.read.json(files)

这是正确的方法吗?有没有其他有效的方法来做到这一点?

根据给出的解决方案,我收到此错误:

org.apache.spark.SparkException: Job 2 cancelled because SparkContext was shut down
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$cleanUpAfterSchedulerStop$1.apply(DAGScheduler.scala:806)
    at org.apache.spark.scheduler.DAGScheduler$$anonfun$cleanUpAfterSchedulerStop$1.apply(DAGScheduler.scala:804)
    at scala.collection.mutable.HashSet.foreach(HashSet.scala:79)
    at org.apache.spark.scheduler.DAGScheduler.cleanUpAfterSchedulerStop(DAGScheduler.scala:804)
    at org.apache.spark.scheduler.DAGSchedulerEventProcessLoop.onStop(DAGScheduler.scala:1658)
    at org.apache.spark.util.EventLoop.stop(EventLoop.scala:84)
    at org.apache.spark.scheduler.DAGScheduler.stop(DAGScheduler.scala:1581)
    at org.apache.spark.SparkContext$$anonfun$stop$7.apply$mcV$sp(SparkContext.scala:1731)
    at org.apache.spark.util.Utils$.tryLogNonFatalError(Utils.scala:1229)
    at org.apache.spark.SparkContext.stop(SparkContext.scala:1730)
    at org.apache.spark.scheduler.cluster.YarnClientSchedulerBackend$MonitorThread.run(YarnClientSchedulerBackend.scala:147)
    at org.apache.spark.scheduler.DAGScheduler.runJob(DAGScheduler.scala:620)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:1832)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:1845)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:1858)
    at org.apache.spark.SparkContext.runJob(SparkContext.scala:1929)
    at org.apache.spark.rdd.RDD$$anonfun$collect$1.apply(RDD.scala:927)
    at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:150)
    at org.apache.spark.rdd.RDDOperationScope$.withScope(RDDOperationScope.scala:111)
    at org.apache.spark.rdd.RDD.withScope(RDD.scala:316)
    at org.apache.spark.rdd.RDD.collect(RDD.scala:926)
    at org.apache.spark.sql.sources.HadoopFsRelation$.listLeafFilesInParallel(interfaces.scala:904)
    at org.apache.spark.sql.sources.HadoopFsRelation$FileStatusCache.listLeafFiles(interfaces.scala:445)
    at org.apache.spark.sql.sources.HadoopFsRelation$FileStatusCache.refresh(interfaces.scala:477)
    at org.apache.spark.sql.sources.HadoopFsRelation.org$apache$spark$sql$sources$HadoopFsRelation$$fileStatusCache$lzycompute(interfaces.scala:489)
    at org.apache.spark.sql.sources.HadoopFsRelation.org$apache$spark$sql$sources$HadoopFsRelation$$fileStatusCache(interfaces.scala:487)
    at org.apache.spark.sql.sources.HadoopFsRelation.cachedLeafStatuses(interfaces.scala:494)
    at org.apache.spark.sql.execution.datasources.json.JSONRelation$$anonfun$4.apply(JSONRelation.scala:110)
    at org.apache.spark.sql.execution.datasources.json.JSONRelation$$anonfun$4.apply(JSONRelation.scala:109)
    at scala.Option.getOrElse(Option.scala:120)
    at org.apache.spark.sql.execution.datasources.json.JSONRelation.dataSchema$lzycompute(JSONRelation.scala:109)
    at org.apache.spark.sql.execution.datasources.json.JSONRelation.dataSchema(JSONRelation.scala:108)
    at org.apache.spark.sql.sources.HadoopFsRelation.schema$lzycompute(interfaces.scala:636)
    at org.apache.spark.sql.sources.HadoopFsRelation.schema(interfaces.scala:635)
    at org.apache.spark.sql.execution.datasources.LogicalRelation.<init>(LogicalRelation.scala:37)
    at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:125)
    at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:136)
    at org.apache.spark.sql.DataFrameReader.json(DataFrameReader.scala:263)
    at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:58)
    at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:63)
    at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:65)
    at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:67)
    at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:69)
    at $iwC$$iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:71)
    at $iwC$$iwC$$iwC$$iwC$$iwC.<init>(<console>:73)
    at $iwC$$iwC$$iwC$$iwC.<init>(<console>:75)
    at $iwC$$iwC$$iwC.<init>(<console>:77)
    at $iwC$$iwC.<init>(<console>:79)
    at $iwC.<init>(<console>:81)
    at <init>(<console>:83)
    at .<init>(<console>:87)
    at .<clinit>(<console>)
    at .<init>(<console>:7)
    at .<clinit>(<console>)
    at $print(<console>)
    at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.lang.reflect.Method.invoke(Method.java:483)
    at org.apache.spark.repl.SparkIMain$ReadEvalPrint.call(SparkIMain.scala:1065)
    at org.apache.spark.repl.SparkIMain$Request.loadAndRun(SparkIMain.scala:1346)
    at org.apache.spark.repl.SparkIMain.loadAndRunReq$1(SparkIMain.scala:840)
    at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:871)
    at org.apache.spark.repl.SparkIMain.interpret(SparkIMain.scala:819)
    at org.apache.zeppelin.spark.SparkInterpreter.interpretInput(SparkInterpreter.java:664)
    at org.apache.zeppelin.spark.SparkInterpreter.interpret(SparkInterpreter.java:629)
    at org.apache.zeppelin.spark.SparkInterpreter.interpret(SparkInterpreter.java:622)
    at org.apache.zeppelin.interpreter.ClassloaderInterpreter.interpret(ClassloaderInterpreter.java:57)
    at org.apache.zeppelin.interpreter.LazyOpenInterpreter.interpret(LazyOpenInterpreter.java:93)
    at org.apache.zeppelin.interpreter.remote.RemoteInterpreterServer$InterpretJob.jobRun(RemoteInterpreterServer.java:276)
    at org.apache.zeppelin.scheduler.Job.run(Job.java:170)
    at org.apache.zeppelin.scheduler.FIFOScheduler$1.run(FIFOScheduler.java:118)
    at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:511)
    at java.util.concurrent.FutureTask.run(FutureTask.java:266)
    at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.access$201(ScheduledThreadPoolExecutor.java:180)
    at java.util.concurrent.ScheduledThreadPoolExecutor$ScheduledFutureTask.run(ScheduledThreadPoolExecutor.java:293)
    at java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1142)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:617)
    at java.lang.Thread.run(Thread.java:745)

【问题讨论】:

    标签: scala apache-spark amazon-s3 filesystems jodatime


    【解决方案1】:

    我不认为它可以更高效,但它绝对不是惯用(使用whilevar)并且可以更短并且更简洁:

    val s3Bucket: String = "S3://myTestBucket/"
    val startDate: LocalDate = new LocalDate(2016, 9, 16)
    val endDate: LocalDate = new LocalDate(2016, 10, 16)
    
    val days: Int = Days.daysBetween(startDate, endDate).getDays
    
    val pathDTF = DateTimeFormat.forPattern("yyyy/MM/dd")
    
    val files: Seq[String] = (0 to days)
      .map(startDate.plusDays)
      .map(d => s"$s3Bucket${pathDTF.print(d)}/*")
    
    val result = sqlContext.read.json(files: _*) 
    

    编辑:感谢@Newbie 的注意——确实不能将文件列表传递给read.json(...),所以最后一行应该是:

    val result = sqlContext.read.json(sc.textFile(files.mkString(",")))
    

    【讨论】:

    • 我是否需要在此处添加显式文件检查,否则如果 s3 密钥没有我想跳到下一个文件夹的任何文件,spark 会处理这个问题。
    • 我的 spark 上下文正在关闭。是因为文件检查吗?
    • 新手,我不确定该异常是根本原因还是症状。还有另一个堆栈跟踪吗?
    • @rado 16/10/16 23:27:57 INFO YarnAllocator:主机上的已完成容器 container_1476653670979_0003_02_000077:ip-172-31-15-9.ec2.internal(状态:完成,退出状态: 1) 16/10/16 23:27:57 WARN YarnAllocator:容器标记为失败:主机上的 container_1476653670979_0003_02_000077:ip-172-31-15-9.ec2.internal。退出状态:1. 诊断:容器启动异常。容器 ID:container_1476653670979_0003_02_000077 退出代码:1 这是我在容器日志中看到的
    • @Tzach :似乎用逗号分隔目录仅适用于 sc.textFile() 而不是 sqlContext.read.json()
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