【问题标题】:Error when importing csv into pyspark dataframe将 csv 导入 pyspark 数据框时出错
【发布时间】:2021-08-23 21:00:25
【问题描述】:

我正在使用 conda 环境通过 ssh/PyCharm 在远程主机上运行 python 代码。
当尝试将 csv 文件导入 PySpark 数据框时,像这样

from pyspark.sql import SparkSession
url = "https://github.com/BigDaMa/COCOA/raw/master/dataset/movie.csv"
self.spark = SparkSession.builder.getOrCreate() 
df = self.spark.read.format("csv").load(url)

我收到以下错误消息:

Traceback (most recent call last):
  File "/home/meike/anaconda3/envs/py3/lib/python3.9/site-packages/pyspark/sql/utils.py", line 111, in deco
    return f(*a, **kw)
  File "/home/meike/anaconda3/envs/py3/lib/python3.9/site-packages/py4j/protocol.py", line 326, in get_return_value
    raise Py4JJavaError(
py4j.protocol.Py4JJavaError: An error occurred while calling o28.load.
: java.lang.UnsupportedOperationException
    at org.apache.hadoop.fs.http.AbstractHttpFileSystem.listStatus(AbstractHttpFileSystem.java:91)
    at org.apache.hadoop.fs.http.HttpsFileSystem.listStatus(HttpsFileSystem.java:23)
    at org.apache.spark.util.HadoopFSUtils$.listLeafFiles(HadoopFSUtils.scala:225)
    at org.apache.spark.util.HadoopFSUtils$.$anonfun$parallelListLeafFilesInternal$1(HadoopFSUtils.scala:95)
    at scala.collection.TraversableLike.$anonfun$map$1(TraversableLike.scala:238)
    at scala.collection.mutable.ResizableArray.foreach(ResizableArray.scala:62)
    at scala.collection.mutable.ResizableArray.foreach$(ResizableArray.scala:55)
    at scala.collection.mutable.ArrayBuffer.foreach(ArrayBuffer.scala:49)
    at scala.collection.TraversableLike.map(TraversableLike.scala:238)
    at scala.collection.TraversableLike.map$(TraversableLike.scala:231)
    at scala.collection.AbstractTraversable.map(Traversable.scala:108)
    at org.apache.spark.util.HadoopFSUtils$.parallelListLeafFilesInternal(HadoopFSUtils.scala:85)
    at org.apache.spark.util.HadoopFSUtils$.parallelListLeafFiles(HadoopFSUtils.scala:69)
    at org.apache.spark.sql.execution.datasources.InMemoryFileIndex$.bulkListLeafFiles(InMemoryFileIndex.scala:158)
    at org.apache.spark.sql.execution.datasources.InMemoryFileIndex.listLeafFiles(InMemoryFileIndex.scala:131)
    at org.apache.spark.sql.execution.datasources.InMemoryFileIndex.refresh0(InMemoryFileIndex.scala:94)
    at org.apache.spark.sql.execution.datasources.InMemoryFileIndex.<init>(InMemoryFileIndex.scala:66)
    at org.apache.spark.sql.execution.datasources.DataSource.createInMemoryFileIndex(DataSource.scala:581)
    at org.apache.spark.sql.execution.datasources.DataSource.resolveRelation(DataSource.scala:417)
    at org.apache.spark.sql.DataFrameReader.loadV1Source(DataFrameReader.scala:325)
    at org.apache.spark.sql.DataFrameReader.$anonfun$load$3(DataFrameReader.scala:307)
    at scala.Option.getOrElse(Option.scala:189)
    at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:307)
    at org.apache.spark.sql.DataFrameReader.load(DataFrameReader.scala:239)
    at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
    at java.base/jdk.internal.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:62)
    at java.base/jdk.internal.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:43)
    at java.base/java.lang.reflect.Method.invoke(Method.java:566)
    at py4j.reflection.MethodInvoker.invoke(MethodInvoker.java:244)
    at py4j.reflection.ReflectionEngine.invoke(ReflectionEngine.java:357)
    at py4j.Gateway.invoke(Gateway.java:282)
    at py4j.commands.AbstractCommand.invokeMethod(AbstractCommand.java:132)
    at py4j.commands.CallCommand.execute(CallCommand.java:79)
    at py4j.GatewayConnection.run(GatewayConnection.java:238)
    at java.base/java.lang.Thread.run(Thread.java:829)

我已成功将相同的 csv 导入 pandas 数据框,这里没有问题。
我还可以创建一个空数据框并手动填充它。

我在 StackOverflow 上找到了this,但作为评论员之一,我需要能够使用 PySpark 进行调试。我不能简单地使用 spark-submit 在终端中运行代码。

我也尝试过导入 findspark 并添加 MySQL 包,但这并不能解决问题。

有什么想法吗?如果需要更多信息,我很乐意补充!

PS: 这些是我收到的一些警告,但它们并没有阻止我的代码运行至今。

Connected to pydev debugger (build 212.4746.96)
WARNING: An illegal reflective access operation has occurred
WARNING: Illegal reflective access by org.apache.spark.unsafe.Platform (file:/home/meike/anaconda3/envs/py3/lib/python3.9/site-packages/pyspark/jars/spark-unsafe_2.12-3.1.2.jar) to constructor java.nio.DirectByteBuffer(long,int)
WARNING: Please consider reporting this to the maintainers of org.apache.spark.unsafe.Platform
WARNING: Use --illegal-access=warn to enable warnings of further illegal reflective access operations
WARNING: All illegal access operations will be denied in a future release
21/08/23 23:07:06 WARN NativeCodeLoader: Unable to load native-hadoop library for your platform... using builtin-java classes where applicable
Using Spark´s default log4j profile: org/apache/spark/log4j-defaults.properties
Setting default log level to "WARN".
To adjust logging level use sc.setLogLevel(newLevel). For SparkR, use setLogLevel(newLevel).

PPS: 我还设法通过将 csv 复制到与 main.py 相同的目录并“从本地”读取它来导入 csv。但该脚本旨在使用作为输入的 URL 执行。为什么这不起作用??

【问题讨论】:

    标签: python pyspark


    【解决方案1】:

    您不能将 csv 从 url 直接加载到 pyspark 中。试试这个:

    url = "https://github.com/BigDaMa/COCOA/raw/master/dataset/movie.csv"
    from pyspark import SparkFiles
    spark.sparkContext.addFile(url)
    df = spark.read.csv("file://"+SparkFiles.get("movie.csv"), header=True, inferSchema= True)
    

    其他方法是通过 pandas 从 url 读取,然后创建 spark 数据框:

    import pandas as pd
    df = spark.createDataFrame(pd.read_csv(url)))
    

    【讨论】:

    • 我在我的公寓环境中成功地在 ubuntu 服务器上使用了你的方法。现在我正在使用带有 spark 内核的 AWS EMR Jupiter Notebook 尝试相同的操作,我收到以下错误消息:--- java.io.FileNotFoundException: File file:/mnt/tmp/spark-c9b0fb0d-5f1b-4bf5-930c -1cdab0ec58d1/userFiles-7f5e270a-688c-43c8-8312-121399b4cd15/movie.csv 不存在 可能基础文件已更新。您可以通过在 SQL 中运行“REFRESH TABLE tableName”命令或通过重新创建所涉及的数据集/数据帧来显式地使 Spark 中的缓存无效。 --- 有什么想法吗?
    • 可能是权限问题,您没有写入文件夹的写入权限。
    • 这对我不起作用:ibb.co/tJ96QCN
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