【问题标题】:How can I improve the execution speed of my script如何提高脚本的执行速度
【发布时间】:2021-12-25 03:41:05
【问题描述】:

我有一个包含大约 1500 万条记录的文件。以下是数据示例

99001597,555555555555,3211,Njro_Kaniani,test,NORTH,Yes,Yes,Yes,smart,Yes,Yes,Yes,Yes,Yes,Yes,IN2017,OnePlus,1,N/A,Yes,Yes,Yes,N/A
99001679,555555555555,1756,Bnju_HTT,Salam,,Y,RAD,Yes,Yes,Yes,smart,Yes,Yes,Yes,Yes,Yes,Yes,BE2012,OnePlus,1,N/A,Yes,Yes,Yes,N/A
99001680,555555555555,1108,Temoni_Kiara,Salam,,Y,RAD,Yes,Yes,Yes,smart,Yes,Yes,Yes,Yes,Yes,Yes,BE2028,OnePlus,1,Google,Yes,Yes,Yes,N/A
99001683,555555555555,1604,Blue_Bay,Nzindo,,Y,COAST,Yes,Yes,Yes,smart,Yes,Yes,Yes,Yes,Yes,Yes,BE2011,OnePlus,1,N/A,Yes,Yes,Yes,N/A
99001683,555555555555,1820,Sgerea_Makuka,Salaam,,N,RAD,Yes,Yes,Yes,smart,Yes,Yes,Yes,Yes,Yes,Yes,BE2011,OnePlus,1,N/A,Yes,Yes,Yes,N/A
99001683,555555555555,1184,Makka,Salaam,,Y,RAD,Yes,Yes,Yes,smart,Yes,Yes,Yes,Yes,Yes,Yes,BE2011,OnePlus,1,N/A,Yes,Yes,Yes,N/A
99001683,555555555555,1381,Leaders_Club,Salam,,Y,RAD,Yes,Yes,Yes,smart,Yes,Yes,Yes,Yes,Yes,Yes,BE2011,OnePlus,1,N/A,Yes,Yes,Yes,N/A
99001683,555555555555,1037,Mbez,Salam,,Y,RAD,Yes,Yes,Yes,smart,Yes,Yes,Yes,Yes,Yes,Yes,BE2011,OnePlus,1,N/A,Yes,Yes,Yes,N/A
99001683,555555555555,1041,Ngano,Salam,,Y,RAD,Yes,Yes,Yes,smart,Yes,Yes,Yes,Yes,Yes,Yes,BE2011,OnePlus,1,N/A,Yes,Yes,Yes,N/A
99001683,555555555555,1313,Kichangani,Salam,,Y,RAD,Yes,Yes,Yes,smart,Yes,Yes,Yes,Yes,Yes,Yes,BE2011,OnePlus,1,N/A,Yes,Yes,Yes,N/A
99001684,555555555555,4975,Nyugusu Campp2,Test,test,Yes,Yes,Yes,smart,Yes,Yes,Yes,Yes,Yes,Yes,BE2026,OnePlus,1,Google,Yes,Yes,Yes,N/A
99001684,555555555555,1041,Ngano,Salam,,Y,RAD,Yes,Yes,Yes,smart,Yes,Yes,Yes,Yes,Yes,Yes,BE2026,OnePlus,1,Google,Yes,Yes,Yes,N/A
99001684,555555555555,1420,Airport_Macro,Salaam,,Y,RAD,Yes,Yes,Yes,smart,Yes,Yes,Yes,Yes,Yes,Yes,BE2026,OnePlus,1,Google,Yes,Yes,Yes,N/A
99001684,555555555555,3147,Technical_Nzoti,test,ORTH,Yes,Yes,Yes,smart,Yes,Yes,Yes,Yes,Yes,Yes,BE2026,OnePlus,1,Google,Yes,Yes,Yes,N/A
99001684,555555555555,4488,Lumala,Mwnza,,Y,Nyeka,Yes,Yes,Yes,smart,Yes,Yes,Yes,Yes,Yes,Yes,BE2026,OnePlus,1,Google,Yes,Yes,Yes,N/A
99001684,555555555555,4975,Nyarugusu Campp2,Kigoma,,Y,Nyeka,Yes,Yes,Yes,smart,Yes,Yes,Yes,Yes,Yes,Yes,BE2026,OnePlus,1,Google

我正在使用以下脚本来计算符合某些条件的行的出现次数。问题是这个脚本很慢。我一天得到大约 200 条输出线。 目前,我的程序将读取 1500 万条记录文件 36,000 次。这是非常低效的(慢!!)。我怎样才能修改我的脚本,只读取一次非常大的文件?

期望的输出

1037,0,0,1,1,1,1,1,1,1,1,1,1
1041,0,0,2,2,2,2,2,2,2,2,2,2
1108,0,0,1,1,1,1,1,1,1,1,1,1
1184,0,0,1,1,1,1,1,1,1,1,1,1
1313,0,0,1,1,1,1,1,1,1,1,1,1
1381,0,0,1,1,1,1,1,1,1,1,1,1
1420,0,0,1,1,1,1,1,1,1,1,1,1
1604,0,0,1,1,1,1,1,1,1,1,1,1
1756,0,0,1,1,1,1,1,1,1,1,1,1
1820,0,0,1,1,1,1,1,1,1,1,1,1
3147,0,0,1,1,1,1,1,0,0,0,0,1
3211,0,0,1,1,1,1,1,0,0,0,0,1
4488,0,0,1,1,1,1,1,1,1,1,1,1
4975,0,0,2,2,2,2,2,1,1,0,0,1

IDs_file 文件包含大约 3000 条记录,每条记录都有 4 位数字

while read i
do

twog=$(cat combined_marketing_sadm_report.csv|awk -v src=$i -F, '{if ((($10 == "Yes")||($10 == "No")) && ($3 == src) && ($9 == "No")&& ($11 == "No")) print $0;}'|wc -l)

threeg=$(cat combined_marketing_sadm_report.csv|awk -v src=$i  -F,'{if (($3 == src) &&($9 == "Yes")&& ($11 == "No")) print $0;}'|wc -l)

fourg=$(cat combined_marketing_sadm_report.csv|awk -v src=$i -F,'{if (($11 == "Yes") && ($3 == src)) print $0;}'|wc -l)
lte2100=$(cat  combined_marketing_sadm_report.csv|awk -v src=$i  -F, '{if (($13 == "Yes") &&  ($3 == src)) print $0;}'|wc -l)
lte800=$(cat  combined_marketing_sadm_report.csv|awk -v src=$i  -F, '{if (($14 == "Yes") &&  ($3 == src)) print $0;}'|wc -l)
lte700=$(cat  combined_marketing_sadm_report.csv|awk -v src=$i  -F, '{if (($15 == "Yes") &&  ($3 == src)) print $0;}'|wc -l)
lte1800=$(cat  combined_marketing_sadm_report.csv|awk -v src=$i  -F, '{if (($16 == "Yes") &&  ($3 == src)) print $0;}'|wc -l)
lte2600=$(cat  combined_marketing_sadm_report.csv|awk -v src=$i  -F, '{if (($17 == "Yes") &&  ($3 == src)) print $0;}'|wc -l)
lte900=$(cat  combined_marketing_sadm_report.csv|awk -v src=$i  -F, '{if (($18 == "Yes") &&  ($3 == src)) print $0;}'|wc -l)
threeg2100=$(cat  combined_marketing_sadm_report.csv|awk -v src=$i  -F, '{if (($24 == "Yes") &&  ($3 == src)) print $0;}'|wc -l)
threeg900=$(cat  combined_marketing_sadm_report.csv|awk -v src=$i  -F, '{if (($25 == "Yes") &&  ($3 == src)) print $0;}'|wc -l)
volte=$(cat  combined_marketing_sadm_report.csv|awk -v src=$i  -F, '{if (($23 == "Yes") &&  ($3 == src)) print $0;}'|wc -l)

echo $i,$twog,$threeg,$fourg,$lte2100,$lte800,$lte700,$lte1800,$lte2600,$lte900,$threeg2100,$threeg900,$volte>>Raw_data_for_report.csv
done < IDs_file

【问题讨论】:

  • I have a file containing about 15 million records 不要使用 shell 来完成这个任务。而是解释目标是什么。期望的结果/输出是什么?
  • 1500 万条记录文件是叫IDSs_file 还是combined_marketing_thing?另一个文件里有什么?
  • 方法 1:将数据导入 SQLite 或其他数据库,添加适当的索引,然后进行查询。方法 2:重写为只在循环内运行一次 awk,而不是 12 次(并摆脱 Cat 和 wc 的无用用法,并将输出重定向移动 outside 循环)拍摄,你可以可能在 awk 中一次性完成这两个文件,不需要 shell。
  • combined_marketing_sadm_report.csv 中有 1500 万条记录,IDS_file 包含大约 3000 条记录,每条记录为 4 位数字
  • 一个awk 脚​​本;第一个文件(IDs_file)被加载到数组中,对于第二个文件(combined_marketing_sadm_report.csv)中的每条记录,检查$3 in array,如果是,则根据各种字段检查增加一组计数器数组(例如,if (...) twog[ID]++; if(...) four[ID]++; ... );这将需要 single 遍历每个文件; END {...} 块包含一个 for 循环以将数组打印到标准输出

标签: arrays linux bash perl awk


【解决方案1】:

解决方案:将所有循环放在一个 awk 程序中:

#! /usr/bin/awk -f

BEGIN {
    FS=OFS=","
    if (src=="") {
        exit
    }
    split(src,arr_src,",")
    for (i in arr_src) {
        src=arr_src[i]
        twog[src]=threeg[src]=fourg[src]=lte2100[src]=lte800[src]=lte700[src]=lte1800[src]=lte2600[src]=lte900[src]=threeg2100[src]=threeg900[src]=volte[src]=0
    }
}
{
    for (i in arr_src) {
        src=arr_src[i]
        if ($3 == src) {
            if (($10 == "Yes" || $10 == "No") && $9 == "No" && $11 == "No") twog[src]++
            if ($9  == "Yes" && $11 == "No") threeg[src]++
            if ($11 == "Yes") fourg[src]++
            if ($13 == "Yes") lte2100[src]++
            if ($14 == "Yes") lte800[src]++
            if ($15 == "Yes") lte700[src]++
            if ($16 == "Yes") lte1800[src]++
            if ($17 == "Yes") lte2600[src]++
            if ($18 == "Yes") lte900[src]++
            if ($24 == "Yes") threeg2100[src]++
            if ($25 == "Yes") threeg900[src]++
            if ($23 == "Yes") volte[src]++
        }
    }
}
END {
    for (i in arr_src) {
        src=arr_src[i]
        print src,twog[src],threeg[src],fourg[src],lte2100[src],lte800[src],lte700[src],lte1800[src],lte2600[src],lte900[src],threeg2100[src],threeg900[src],volte[src]
    }
}

呼叫:

./counter.awk -v src=1037,1041,4975 combined_marketing_sadm_report.csv

更新

如果您的 src 值在文件中,则脚本 (counter-v2.awk) 变为:

#! /usr/bin/awk -f

BEGIN {
    FS=OFS=","
}
FNR == NR {
    i++
    arr_src[i] = $0
    next
}
FNR == 1 {
    for (i in arr_src) {
        src=arr_src[i]
        twog[src]=threeg[src]=fourg[src]=lte2100[src]=lte800[src]=lte700[src]=lte1800[src]=lte2600[src]=lte900[src]=threeg2100[src]=threeg900[src]=volte[src]=0
    }
}
{
    for (i in arr_src) {
        src=arr_src[i]
        if ($3 == src) {
            if (($10 == "Yes" || $10 == "No") && $9 == "No" && $11 == "No") twog[src]++
            if ($9  == "Yes" && $11 == "No") threeg[src]++
            if ($11 == "Yes") fourg[src]++
            if ($13 == "Yes") lte2100[src]++
            if ($14 == "Yes") lte800[src]++
            if ($15 == "Yes") lte700[src]++
            if ($16 == "Yes") lte1800[src]++
            if ($17 == "Yes") lte2600[src]++
            if ($18 == "Yes") lte900[src]++
            if ($24 == "Yes") threeg2100[src]++
            if ($25 == "Yes") threeg900[src]++
            if ($23 == "Yes") volte[src]++
        }
    }
}
END {
    for (i in arr_src) {
        src=arr_src[i]
        print src,twog[src],threeg[src],fourg[src],lte2100[src],lte800[src],lte700[src],lte1800[src],lte2600[src],lte900[src],threeg2100[src],threeg900[src],volte[src]
    }
}

文件IDSs_file

1037
1041
1108
1184
1313
1381
1420
1604
1756
1820
3147
3211
4488
4975

像这样执行(警告:文件顺序很重要):

./counter-v2.awk IDSs_file combined_marketing_sadm_report.csv

输出:

1037,0,0,1,1,1,1,1,1,1,1,1,1
1041,0,0,2,2,2,2,2,2,2,2,2,2
1108,0,0,1,1,1,1,1,1,1,1,1,1
1184,0,0,1,1,1,1,1,1,1,1,1,1
1313,0,0,1,1,1,1,1,1,1,1,1,1
1381,0,0,1,1,1,1,1,1,1,1,1,1
1420,0,0,1,1,1,1,1,1,1,1,1,1
1604,0,0,1,1,1,1,1,1,1,1,1,1
1756,0,0,1,1,1,1,1,1,1,1,1,1
1820,0,0,1,1,1,1,1,1,1,1,1,1
3147,0,0,1,1,1,1,1,0,0,0,0,1
3211,0,0,1,1,1,1,1,0,0,0,0,1
4488,0,0,1,1,1,1,1,1,1,1,1,1
4975,0,0,2,2,2,2,2,1,1,0,0,1

【讨论】:

  • 谢谢,@arnaud。但是如何迭代 IDSs_file 文件中包含的所有 3k src 值?
  • @Raziel,我已经更新了对两个输入文件的回复
  • 非常感谢@Arnaud Valmary
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