【问题标题】:Compiling a program using <graphviz/gvc.h>: undefined reference to `gvContext'使用 <graphviz/gvc.h> 编译程序:未定义对 `gvContext' 的引用
【发布时间】:2023-03-19 11:08:01
【问题描述】:

我正在处理一个相当大的项目的某些部分,该项目涉及在 C++ 上使用 GraphViz,但我似乎无法使用 GraphViz 函数。我的代码旨在自动从.dot 文件生成.png,但是当我尝试编译它时,我不断收到对'functionName'(与gvc.h 相关的所有函数)的“未定义引用”。我高度怀疑在编译过程中没有链接,但我不知道如何处理CMakeLists.txt 以及我应该首先链接什么。但是,我确实注意到我的/usr/include/graphviz 文件夹中有一个gv.cpp 文件,但我不知道我是否应该以某种方式链接该文件,或者它是否完全不同。

/usr/bin/ld: CMakeFiles/ag_gen.dir/src/main.cpp.o: in function `save_image_gv(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >)':
main.cpp:(.text+0xf07): undefined reference to `gvContext'
/usr/bin/ld: main.cpp:(.text+0xf27): undefined reference to `agread'
/usr/bin/ld: main.cpp:(.text+0xf3c): undefined reference to `gvLayout'
/usr/bin/ld: main.cpp:(.text+0xfc8): undefined reference to `gvRender'
/usr/bin/ld: main.cpp:(.text+0xfef): undefined reference to `gvFreeLayout'
/usr/bin/ld: main.cpp:(.text+0xff7): undefined reference to `agclose'
/usr/bin/ld: main.cpp:(.text+0xfff): undefined reference to `gvFreeContext'
collect2: error: ld returned 1 exit status
make[3]: *** [CMakeFiles/ag_gen.dir/build.make:460: ag_gen] Error 1
make[2]: *** [CMakeFiles/Makefile2:156: CMakeFiles/ag_gen.dir/all] Error 2
make[1]: *** [CMakeFiles/Makefile2:163: CMakeFiles/ag_gen.dir/rule] Error 2
make: *** [Makefile:164: ag_gen] Error 2

这是我在 main.cpp 中的代码有问题的部分:

#include <graphviz/gvc.h>
bool save_image_gv(std::string filename){
    GVC_t *gvc;
    Agraph_t *g;
    FILE *fp;
    gvc = gvContext();
    fp = fopen((filename).c_str(), "r");
    g = agread(fp, 0);
    gvLayout(gvc, g, "dot");
    gvRender(gvc, g, "png", fopen((filename+".png").c_str(), "w"));
    gvFreeLayout(gvc, g);
    agclose(g);
    return (gvFreeContext(gvc));
}

这是我的 CMakeLists.txt:

cmake_minimum_required(VERSION 3.0)

# Uncomment for gcc
# set(CMAKE_C_COMPILER "gcc-8")
# set(CMAKE_CXX_COMPILER "g++-8")

project(ag_gen)

set_source_files_properties(
    mem.c
    PROPERTIES
        COMPILE_DEFINITIONS UNIT_TEST=1
)

# Common compiler options among built types
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++14")

# Specific compiler options for Debug or Release builds
set(CMAKE_CXX_FLAGS_DEBUG "${CMAKE_CXX_FLAGS_DEBUG} -g -O0 -ggdb -Wall -fopenmp -pedantic")
set(CMAKE_CXX_FLAGS_RELWITHDEBINFO "${CMAKE_CXX_FLAGS_RELWITHDEBINFO} -g -Wall -fopenmp -pedantic -O1")
set(CMAKE_CXX_FLAGS_RELEASE "${CMAKE_CXX_FLAGS_RELEASE} -O1 -fopenmp")

set(PostgreSQL_TYPE_INCLUDE_DIR "9.5")
set(PostgreSQL_ADDITIONAL_VERSIONS "10.1" "10" "9.5")

find_program(LSB_RELEASE lsb_release)
execute_process(COMMAND ${LSB_RELEASE} -is
    OUTPUT_VARIABLE LSB_RELEASE_ID_SHORT
    OUTPUT_STRIP_TRAILING_WHITESPACE
)

include_directories("/usr/include/postgresql")

# Apple has a different openssl directory when using brew
if(APPLE)
    set(BISON_EXECUTABLE "/usr/local/opt/bison/bin/bison")
    set(OPENSSL_ROOT_DIR "/usr/local/opt/openssl")
endif()

set(ENV{PKG_CONFIG_PATH} "/usr/local/lib/pkgconfig")

find_package(PkgConfig REQUIRED)
find_package(PostgreSQL REQUIRED)
find_package(OpenMP)

find_package(BISON 2.4 REQUIRED)
find_package(FLEX REQUIRED)
find_package(Boost REQUIRED)

find_package(OpenSSL)
find_package(Doxygen)

pkg_check_modules(CMOCKA cmocka)
pkg_check_modules(CPPREDIS cpp_redis)

if(OpenSSL_FOUND)
    include_directories(${OPENSSL_INCLUDE_DIR})
endif()

# Enable thread-level parallelization if OpenMP is found.
if(OpenMP_CXX_FOUND)
    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} ${OpenMP_CXX_FLAGS}")
endif()

if(DOXYGEN_FOUND)
    configure_file(${CMAKE_CURRENT_SOURCE_DIR}/Doxyfile.in ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile @ONLY)
    add_custom_target(doc ALL ${DOXYGEN_EXECUTABLE} ${CMAKE_CURRENT_BINARY_DIR}/Doxyfile
        WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
        COMMENT "Generating API documentation with Doxygen"
        VERBATIM)
endif(DOXYGEN_FOUND)

include_directories("${CMAKE_SOURCE_DIR}/src/")

file(GLOB ag_gen_src "${CMAKE_SOURCE_DIR}/src/ag_gen/*.cpp")
file(GLOB utils_src "${CMAKE_SOURCE_DIR}/src/util/*.c" "${CMAKE_SOURCE_DIR}/src/util/*.cpp")

########################
### Network Model Parser
########################

BISON_TARGET(nm_parser "${CMAKE_SOURCE_DIR}/src/parser/nm-parser/nm_parser.yy"
    "${CMAKE_CURRENT_BINARY_DIR}/nm_parser.c"
    DEFINES_FILE "${CMAKE_CURRENT_BINARY_DIR}/nm_parser.tab.h")
FLEX_TARGET(nm_scanner "${CMAKE_SOURCE_DIR}/src/parser/nm-parser/nm_scanner.l"
    "${CMAKE_CURRENT_BINARY_DIR}/nm_scanner.c"
    COMPILE_FLAGS "-Pnm")
ADD_FLEX_BISON_DEPENDENCY(nm_scanner nm_parser)

#add_executable(nm_test ${FLEX_nm_scanner_OUTPUTS} ${BISON_nm_parser_OUTPUTS} ${utils_src})
#target_include_directories(nm_test PRIVATE ${CMAKE_CURRENT_BINARY_DIR} "${CMAKE_SOURCE_DIR}/src/compiler/nm-parser")

##########################
### Exploit Pattern Parser
##########################

BISON_TARGET(xp_parser "${CMAKE_SOURCE_DIR}/src/parser/xp-parser/xp_parser.yy"
    "${CMAKE_CURRENT_BINARY_DIR}/xp_parser.c"
    DEFINES_FILE "${CMAKE_CURRENT_BINARY_DIR}/xp_parser.tab.h")
FLEX_TARGET(xp_scanner "${CMAKE_SOURCE_DIR}/src/parser/xp-parser/xp_scanner.l"
    "${CMAKE_CURRENT_BINARY_DIR}/xp_scanner.c"
    COMPILE_FLAGS "-Pxp")
ADD_FLEX_BISON_DEPENDENCY(xp_scanner xp_parser)

#add_executable(xp_test ${FLEX_xp_scanner_OUTPUTS} ${BISON_xp_parser_OUTPUTS} ${utils_src})
#target_include_directories(xp_test PRIVATE ${CMAKE_CURRENT_BINARY_DIR} "${CMAKE_SOURCE_DIR}/src/compiler/xp-parser")

####################
### Main application
####################

add_executable(ag_gen "${CMAKE_SOURCE_DIR}/src/main.cpp"
    ${FLEX_nm_scanner_OUTPUTS} ${BISON_nm_parser_OUTPUTS}
    ${FLEX_xp_scanner_OUTPUTS} ${BISON_xp_parser_OUTPUTS}
    ${ag_gen_src} ${utils_src})
target_link_libraries(ag_gen ${PostgreSQL_LIBRARIES})

add_executable(decode "${CMAKE_SOURCE_DIR}/src/tools/decode.cpp"
    ${ag_gen_src} ${utils_src})
target_link_libraries(decode ${PostgreSQL_LIBRARIES})

if(CPPREDIS_FOUND)
    #include_directories("${CPPREDIS_INCLUDE_DIRS}")
    link_directories("${CPPREDIS_LIBRARY_DIRS}")

    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -DREDIS")

    target_link_libraries(ag_gen cpp_redis tacopie)
    target_link_libraries(decode cpp_redis tacopie)
endif()

################
### Unit Testing
################

if(CMOCKA_FOUND)
    add_executable(dynstr_test ${CMAKE_SOURCE_DIR}/src/util/mem.c ${CMAKE_SOURCE_DIR}/src/tests/mem_test.c)
    target_link_libraries(dynstr_test ${CMOCKA_LIBRARIES})
endif()

# Files to be added to build directory
configure_file("config.ini" "config.ini" COPYONLY)

if(CPPREDIS_FOUND)
add_custom_command(TARGET ag_gen PRE_BUILD
                   COMMAND ${CMAKE_COMMAND} -E copy_directory
                   ${CMAKE_SOURCE_DIR}/redis_scripts $<TARGET_FILE_DIR:ag_gen>/redis_scripts)
endif()

【问题讨论】:

  • 欢迎来到 Stack Overflow!您的 CMake 文件似乎没有在任何地方提及 graphviz。您是否尝试链接到 Graphviz 库?它应该位于/usr/lib64/graphviz 或类似...
  • 由于我对 CMake 还很陌生,所以在链接到像 Graphviz 这样的库时,我不知道从哪里开始。你能带领我走向正确的方向吗?在 /usr/lib64/graphviz 下查看产生了 libgvplugin_core.so、libgvplugin_core.so.6、libgvplugin_gdk.so 和其他类似文件等文件。我必须单独链接所有这些吗?

标签: c++ linux cmake


【解决方案1】:

libgvc.so 与您的二进制文件链接如下:

target_link_libraries(ag_gen PUBLIC gvc)

【讨论】:

  • 谢谢,这实际上帮助我找到了自己的解决方案。我可以问(供将来参考)如何知道应该使用哪些库名称? (在这种情况下,显然需要 gvc 和 cgraph)
  • 任一:1) 了解库,2) 在库文档中查找它 3) 查看已安装的实际库文件并使用 nm -D 查看它们定义的符号跨度>
【解决方案2】:

使用 Botje 的回答和this Stack Overflow question,我能够解决问题。这是我对我的CMakeLists.txt 所做的:

我在target_link_libraries 中添加了cgraphgvc

target_link_libraries(ag_gen ${PostgreSQL_LIBRARIES} cgraph gvc)

而且,瞧!经过这个简单的改动,编译成功了!

【讨论】:

  • CMake 不使用CMAKE_CXX_FLAGS 进行链接,因此在此处添加-l 标志不会做任何事情。
  • 你是绝对正确的。我不确定是什么促使我这样做。我已经编辑了我的答案以排除添加-l 标志。
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