【发布时间】：2021-07-31 00:05:26
【问题描述】：
我正在使用它来安装maEndToEnd 包-
BiocManager::install("maEndToEnd", version = "devel")
它正在显示-
'getOption("repos")' replaces Bioconductor standard repositories, see
'?repositories' for details
replacement repositories:
CRAN: https://cran.rstudio.com/
Bioconductor version 3.13 (BiocManager 1.30.13), R 4.1.0 beta (2021-05-06 r80268)
Installing package(s) 'BiocVersion', 'maEndToEnd'
also installing the dependencies ‘formatR’, ‘lambda.r’, ‘futile.options’, ‘RCurl’, ‘GenomeInfoDbData’, ‘base64’, ‘htmlwidgets’, ‘futile.logger’, ‘snow’, ‘BH’, ‘fastmatch’, ‘tweenr’, ‘polyclip’, ‘RcppEigen’, ‘RcppArmadillo’, ‘backports’, ‘colorspace’, ‘patchwork’, ‘lazyeval’, ‘GenomeInfoDb’, ‘XVector’, ‘MatrixGenerics’, ‘DelayedArray’, ‘iterators’, ‘bit64’, ‘blob’, ‘plogr’, ‘bit’, ‘KEGGREST’, ‘gcrma’, ‘hexbin’, ‘BeadDataPackR’, ‘illuminaio’, ‘Formula’, ‘gridExtra’, ‘data.table’, ‘htmlTable’, ‘viridis’, ‘htmltools’, ‘base64enc’, ‘png’, ‘jpeg’, ‘systemfonts’, ‘BiocParallel’, ‘DO.db’, ‘fgsea’, ‘ggforce’, ‘ggrepel’, ‘tidygraph’, ‘graphlayouts’, ‘checkmate’, ‘bitops’, ‘farver’, ‘labeling’, ‘munsell’, ‘viridisLite’, ‘xtable’, ‘ape’, ‘aplot’, ‘tidytree’, ‘treeio’, ‘BiocGenerics’, ‘IRanges’, ‘GenomicRanges’, ‘SummarizedExperiment’, ‘Biostrings’, ‘affyio’, ‘foreach’, ‘S4Vectors’, ‘RSQLite’, ‘DBI’, ‘ff’, ‘XML’, ‘AnnotationDbi’, ‘org.Hs.eg.db’, ‘affxparser’, ‘preprocessCore’, ‘zlibbioc’, ‘affy’, ‘affyPLM’, ‘beadarray’, ‘gridSVG’, ‘Hmisc’, ‘hwriter’, ‘latticeExtra’, ‘setRNG’, ‘vsn’, ‘svglite’, ‘graph’, ‘GO.db’, ‘SparseM’, ‘DOSE’, ‘ggraph’, ‘reactome.db’, ‘igraph’, ‘graphite’, ‘downloader’, ‘GOSemSim’, ‘plyr’, ‘qvalue’, ‘rvcheck’, ‘gtools’, ‘caTools’, ‘gtable’, ‘isoband’, ‘scales’, ‘annotate’, ‘generics’, ‘tidyselect’, ‘cpp11’, ‘cowplot’, ‘reshape2’, ‘scatterpie’, ‘shadowtext’, ‘ggtree’, ‘Biobase’, ‘oligoClasses’, ‘ArrayExpress’, ‘pd.hugene.1.0.st.v1’, ‘hugene10sttranscriptcluster.db’, ‘oligo’, ‘arrayQualityMetrics’, ‘limma’, ‘topGO’, ‘ReactomePA’, ‘clusterProfiler’, ‘gplots’, ‘ggplot2’, ‘geneplotter’, ‘pheatmap’, ‘RColorBrewer’, ‘dplyr’, ‘tidyr’, ‘matrixStats’, ‘genefilter’, ‘openxlsx’, ‘Rgraphviz’, ‘enrichplot’
我使用的是 R 版本 R-4.1.0beta。如何解决这个问题？
提前谢谢你。
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标签： r package bioconductor