在 macOS 上更新 gdal 后安装 R 包 sf 0.9.0 时出错

Question

sf 和 rproj 一直在 mac 上工作，并且在升级到 Catalina / R 3.6.2 后仍在工作。

我尝试从 CRAN 和开发版安装最新版本的 sf (0.9.0)，但两种方式都出现错误，configure: error: libproj not found in standard or given locations.

我已经检查并删除了我计算机上 gdal 和 proj 的所有最后痕迹，将两者都卸载了，重新安装了，但仍然是同样的问题。现在，尝试在我的计算机上安装旧版本的sf (0.8.1) 也失败了。完全被这里难住了！

GDAL 2.4.4，于 2020 年 1 月 8 日发布

R v3.6.2

macOS 10.15.3

configure: CC: clang
configure: CXX: clang++ -std=gnu++11
checking for gdal-config... /usr/local/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 2.4.4
checking GDAL version >= 2.0.1... yes
checking for gcc... clang
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether clang accepts -g... yes
checking for clang option to accept ISO C89... none needed
checking how to run the C preprocessor... clang -E
checking for grep that handles long lines and -e... /usr/bin/grep
checking for egrep... /usr/bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking gdal.h usability... yes
checking gdal.h presence... yes
checking for gdal.h... yes
checking GDAL: linking with --libs only... yes
checking GDAL: /usr/local/Cellar/gdal/2.4.4_2/share/gdal/pcs.csv readable... yes
checking GDAL: checking whether PROJ is available for linking:... yes
checking GDAL: checking whether PROJ is available fur running:... yes
configure: GDAL: 2.4.4
checking proj.h usability... yes
checking proj.h presence... yes
checking for proj.h... yes
checking PROJ: checking whether PROJ and sqlite3 are available for linking:... no
configure: error: libproj not found in standard or given locations.

对于rgdal...

* installing *source* package ‘rgdal’ ...
** package ‘rgdal’ successfully unpacked and MD5 sums checked
** using staged installation
configure: R_HOME: /Library/Frameworks/R.framework/Resources
configure: CC: clang
configure: CXX: clang++ -std=gnu++11
configure: C++11 support available
configure: rgdal: 1.4-7
checking for /usr/bin/svnversion... yes
configure: svn revision: 845
checking for gdal-config... /usr/local/bin/gdal-config
checking gdal-config usability... yes
configure: GDAL: 2.4.4
checking C++11 support for GDAL >= 2.3.0... yes
checking GDAL version >= 1.11.4... yes
checking GDAL version <= 2.5 or >= 3.0... yes
checking gdal: linking with --libs only... yes
checking GDAL: gdal-config data directory readable... yes
checking GDAL: /usr/local/Cellar/gdal/2.4.4_2/share/gdal/pcs.csv readable... yes
configure: pkg-config proj not available
  set PKG_CONFIG_PATH to the directory containing proj.pc
configure: PROJ version not determined using pkg-config proj
configure: proj CPP flags:  -I/usr/local/Cellar/gdal/2.4.4_2/include
configure: PROJ LIBS:  -lproj
checking PROJ header API:... proj_api.h
checking proj_api.h presence and usability... no
configure: error: proj_api.h not found in standard or given locations.
ERROR: configuration failed for package ‘rgdal’
* removing ‘/Library/Frameworks/R.framework/Versions/3.6/Resources/library/rgdal

Answer 1

如果其他人遇到此问题，经过数小时的挖掘here 终于找到了解决方案。

Answer 2

适合我的解决方案。我已将其发布在： https://biostatsr.blogspot.com/2021/05/install-sf-from-github-source-in-macosx.html

在终端。您必须安装 MacBrew。如果没有，请使用：

/bin/bash -c "$(curl -fsSL https://raw.githubusercontent.com/Homebrew/install/HEAD/install.sh)"

然后

brew install proj

brew install gdal

brew install geos

sudo R

然后在 R 中：

 library("devtools")

 install_github("r-spatial/sf", configure.args = "--with-proj-include=/usr/local/include --with-proj-lib=/usr/local/lib")

还有……

packageVersion("sf")

[1]‘0.9.9’