【发布时间】:2019-06-19 11:16:23
【问题描述】:
我正在将 CNN 应用于包含 4684 张大小为 2000*102 的图像的数据集。我在 keras 中使用 5 折交叉验证来记录性能指标。我正在使用del.model()、del.histroy 和K.clear_session(),但在运行 2 次后,它给出了 OOM 错误。请参阅下面开发的算法。在 11GB 内存的 1080Ti 上运行。电脑内存 32GB
kf = KFold(n_splits=5, shuffle=True)
kf.get_n_splits(data_new)
AUC_SCORES = []
KAPPA_SCORES = []
MSE = []
Accuracy = []
for train, test in kf.split(data_new):
Conf_model = None
Conf_model = Sequential()
Conf_model.add(Conv2D(32, (20,102),activation='relu',input_shape=(img_rows,img_cols,1),padding='same',data_format='channels_last'))
Conf_model.add(MaxPooling2D((2,2),padding='same',dim_ordering="th"))
Conf_model.add(Dropout(0.2))
Conf_model.add(Flatten())
Conf_model.add(Dense(64, activation='relu'))
Conf_model.add(Dropout(0.5))
Conf_model.add(Dense(num_classes, activation='softmax'))
Conf_model.compile(loss=keras.losses.binary_crossentropy, optimizer=keras.optimizers.Adam(),metrics=['accuracy'])
data_train = data_new[train]
data_train.shape
labels_train = labels[train]
data_test = data_new[test]
data_test_Len = len(data_test)
data_train = data_train.reshape(data_train.shape[0],img_rows,img_cols,1)
data_test = data_test.reshape(data_test.shape[0],img_rows,img_cols,1)
data_train = data_train.astype('float32')
data_test = data_test.astype('float32')
labels_test = labels[test]
test_lab = list(labels_test)#test_lab.append(labels_test)
labels_train = to_categorical(labels_train,num_classes)
labels_test_Shot = to_categorical(labels_test,num_classes)
print("Running Fold")
history = Conf_model.fit(data_train, labels_train, batch_size=batch_size,epochs=epochs,verbose=1)
Conf_predicted_classes=Conf_model.predict(data_test)
Conf_predict=Conf_model.predict_classes(data_test)
Conf_Accuracy = accuracy_score(labels_test, Conf_predict)
Conf_Mean_Square = mean_squared_error(labels_test, Conf_predict)
Label_predict = list(Conf_predict)#Label_predict.append(Conf_predict)
Conf_predicted_classes = np.argmax(np.round(Conf_predicted_classes),axis=1)
Conf_Confusion = confusion_matrix(labels_test, Conf_predicted_classes)
print(Conf_Confusion)
Conf_AUC = roc_auc_score(labels_test, Conf_predict)
print("AUC value for Conf Original Data: ", Conf_AUC)
Conf_KAPPA = cohen_kappa_score(labels_test, Conf_predict)
print("Kappa value for Conf Original Data: ", Conf_KAPPA)
AUC_SCORES.append(Conf_AUC)
KAPPA_SCORES.append(abs(Conf_KAPPA))
MSE.append(Conf_Mean_Square)
Accuracy.append(Conf_Accuracy)
del history
del Conf_model
K.clear_session()
以下错误
ResourceExhaustedError: OOM when allocating tensor with shape[1632000,64] and type float on /job:localhost/replica:0/task:0/device:GPU:0 by allocator GPU_0_bfc
[[{{node training/Adam/gradients/dense_1/MatMul_grad/MatMul_1}} = MatMul[T=DT_FLOAT, transpose_a=true, transpose_b=false, _device="/job:localhost/replica:0/task:0/device:GPU:0"](flatten_1/Reshape, training/Adam/gradients/dense_1/Relu_grad/ReluGrad)]]
Hint: If you want to see a list of allocated tensors when OOM happens, add report_tensor_allocations_upon_oom to RunOptions for current allocation info.
我尝试了下面的代码,似乎它有效。
def clear_mem():
try: tf.sess.close()
except: pass
sess = tf.InteractiveSession()
K.set_session(sess)
return
【问题讨论】:
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愚蠢的问题,但你能看看
nvidia-smi并全程监控吗?特别是当第一个模型被杀死时,执行time.sleep()以查看内存是否在创建第二个模型之前被释放。如果我没有错(可能是),内存将不会被释放。我假设您使用的是tf-keras或tensorflow后端? -
感谢您的回复,我在 Windows 上运行,所以我使用 GPU-Z 来监控内存。关于如何在每次折叠后清除 GPU 内存的任何建议。我正在使用 TensorFlow 后端。但问题是它以前使用相同的代码工作。现在它开始抛出错误。
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运行 GPU-Z 是我的假设正确,因为它没有在实例化之间被释放?
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你能在运行第一个火车步骤之前运行
tf.get_default_graph().finalize()吗?它会引发任何错误吗?或者它仍然完成给定时期的训练? -
gabirele,我在 model.fit 之前添加了您的建议,但它抛出了错误。 raise RuntimeError("Graph is finalized and cannot be modified.") RuntimeError: Graph is finalized and cannot be modified.
标签: tensorflow gpu conv-neural-network cross-validation