使用 shinyapps.io 并重新连接到主机 .Rmd 报告时遇到问题

Question

我有一个使用以下库的报告的 .Rmd 文件：lubridate、plotly、DT、pracma、plyr、dplyr、scales。我的目标是在 shinyapps.io 上托管此文档，以便我的经理可以通过链接轻松访问它。不幸的是，当我尝试通过运行以下代码进行部署时：

rsconnect::setAccountInfo(name='myAccount',
          token='myToken',
          secret='mySecret')

library(rsconnect)

rsconnect::deployDoc('myFile.Rmd')

它说部署成功，但是加载的网页只是报错。这是我在日志中得到的：

...
...
... 
2019-08-13T02:29:26.571244+00:00 shinyapps[1080409]: Warning: Error in 
library: there is no package called 'lubridate'
2019-08-13T02:29:26.577255+00:00 shinyapps[1080409]:   151: stop
2019-08-13T02:29:26.577257+00:00 shinyapps[1080409]:   150: library
2019-08-13T02:29:26.577258+00:00 shinyapps[1080409]:   148: eval
2019-08-13T02:29:26.577258+00:00 shinyapps[1080409]:   149: eval
2019-08-13T02:29:26.577259+00:00 shinyapps[1080409]:   143: evaluate_call
2019-08-13T02:29:26.577260+00:00 shinyapps[1080409]:   142: evaluate::evaluate
2019-08-13T02:29:26.577260+00:00 shinyapps[1080409]:   141: evaluate
2019-08-13T02:29:26.577261+00:00 shinyapps[1080409]:   138: call_block
2019-08-13T02:29:26.577261+00:00 shinyapps[1080409]:   139: block_exec
2019-08-13T02:29:26.577262+00:00 shinyapps[1080409]:   137: process_group.block
2019-08-13T02:29:26.577262+00:00 shinyapps[1080409]:   134: process_file
2019-08-13T02:29:26.577262+00:00 shinyapps[1080409]:   133: knitr::knit
2019-08-13T02:29:26.577263+00:00 shinyapps[1080409]:   132: <Anonymous>
2019-08-13T02:29:26.577263+00:00 shinyapps[1080409]:   127: <reactive>
2019-08-13T02:29:26.577264+00:00 shinyapps[1080409]:   111: doc
2019-08-13T02:29:26.577264+00:00 shinyapps[1080409]:   110: shiny::renderUI
2019-08-13T02:29:26.577265+00:00 shinyapps[1080409]:   109: func
2019-08-13T02:29:26.577265+00:00 shinyapps[1080409]:    96: origRenderFunc
2019-08-13T02:29:26.577266+00:00 shinyapps[1080409]:    95: output$__reactivedoc__
2019-08-13T02:29:26.577266+00:00 shinyapps[1080409]:    15: <Anonymous>
2019-08-13T02:29:26.577267+00:00 shinyapps[1080409]:    12: fn
2019-08-13T02:29:26.577266+00:00 shinyapps[1080409]:    13: rmarkdown::run
2019-08-13T02:29:26.577267+00:00 shinyapps[1080409]:     7: connect$retry
2019-08-13T02:29:26.577268+00:00 shinyapps[1080409]:     6: eval
2019-08-13T02:29:26.577268+00:00 shinyapps[1080409]:     5: eval

就上下文而言，lubridate 是我尝试在 R 脚本中加载的第一个包。我都运行了 rconnect 代码并尝试使用发布按钮，但无济于事。

我也遵循了这个帖子中的建议，也无济于事：deploy a Rmd interactive doc with Shinyapps.io

有人知道发生了什么吗？我是否以正确的方式完成这项任务？如果没有，应该怎么做？最后，如果我在这里完全搞砸了，是否有一种替代方法可以更轻松/可靠地用于托管 .Rmd 报告？

更新：已询问者的部署日志

来自我的 R 控制台：

> rsconnect::setAccountInfo(name='myAccount',
+             token='myToken',
+             secret='mySecret')
> library(rsconnect)
> rsconnect::deployDoc('myFile')
Discovering document dependencies... OK
Preparing to deploy document...
Update application currently deployed at
https://r3dp4nda.shinyapps.io/nf_subjective_measures/? [Y/n] Y
DONE
Uploading bundle for document: 1080409...DONE
Deploying bundle: 2313819 for document: 1080409 ...
Waiting for task: 638103202
  building: Processing bundle: 2313819
  building: Building image: 2452900
  building: Installing system dependencies
  building: Installing packages
  building: Installing files
  building: Pushing image: 2452900
  deploying: Starting instances
  rollforward: Activating new instances
  terminating: Stopping old instances
Document successfully deployed to https://myAccount.shinyapps.io/myFile/

来自shinyapps.io：

2019-08-13T14:13:56.809840+00:00 shinyapps[1080409]: 
2019-08-13T14:13:56.809842+00:00 shinyapps[1080409]: Listening on http://127.0.0.1:37180
2019-08-13T14:14:03.507715+00:00 shinyapps[1080409]: 
2019-08-13T14:14:04.240749+00:00 shinyapps[1080409]: 
2019-08-13T14:14:04.240752+00:00 shinyapps[1080409]: 
2019-08-13T14:14:04.240753+00:00 shinyapps[1080409]: processing file: NF_Subjective_Measures.Rmd
2019-08-13T14:14:04.252522+00:00 shinyapps[1080409]: 
  |                                                                       
  |                                                                 |   0%
  |                                                                       
  |...                                                              |   4%
2019-08-13T14:14:04.259030+00:00 shinyapps[1080409]:  $ include: logi FALSE
2019-08-13T14:14:04.252728+00:00 shinyapps[1080409]: 
2019-08-13T14:14:04.253325+00:00 shinyapps[1080409]: 
  |                                                                       
  |......                                                           |   9%
2019-08-13T14:14:04.254679+00:00 shinyapps[1080409]: label: unnamed-chunk-1 (with options) 
2019-08-13T14:14:04.256983+00:00 shinyapps[1080409]: List of 2
2019-08-13T14:14:04.258442+00:00 shinyapps[1080409]:  $ eval   : logi FALSE
2019-08-13T14:14:04.259044+00:00 shinyapps[1080409]: 
2019-08-13T14:14:04.263676+00:00 shinyapps[1080409]: 
  |                                                                       
  |........                                                         |  13%
2019-08-13T14:14:04.263722+00:00 shinyapps[1080409]:   ordinary text without R code
2019-08-13T14:14:04.263943+00:00 shinyapps[1080409]: 
  |                                                                       
  |...........                                                      |  17%
2019-08-13T14:14:04.264450+00:00 shinyapps[1080409]: label: unnamed-chunk-2 (with options) 
2019-08-13T14:14:04.252725+00:00 shinyapps[1080409]:   ordinary text without R code
2019-08-13T14:14:04.264710+00:00 shinyapps[1080409]: List of 1
2019-08-13T14:14:04.265360+00:00 shinyapps[1080409]:  $ echo: logi FALSE
2019-08-13T14:14:04.265372+00:00 shinyapps[1080409]: 
2019-08-13T14:14:04.308108+00:00 shinyapps[1080409]: Warning: Error in library: there is no package called 'lubridate'

Answer 1

解决了。对于其他任何对此不熟悉的人，请确保您没有任何 install.packages 调用或此：

rsconnect::setAccountInfo(name='myAccount',
      token='myToken',
      secret='mySecret')

library(rsconnect)

rsconnect::deployDoc('myFile.Rmd')

在您的代码正文中。