【问题标题】:Issue with UDF on a column of Vectors in PySpark DataFramePySpark DataFrame 中的向量列上的 UDF 问题
【发布时间】:2015-09-03 12:34:42
【问题描述】:

我在 PySpark 中的向量列上使用 UDF 时遇到问题,可以在此处说明:

from pyspark import SparkContext
from pyspark.sql import Row
from pyspark.sql.types import DoubleType
from pyspark.sql.functions import udf
from pyspark.mllib.linalg import Vectors

FeatureRow = Row('id', 'features')
data = sc.parallelize([(0, Vectors.dense([9.7, 1.0, -3.2])),
                       (1, Vectors.dense([2.25, -11.1, 123.2])),
                       (2, Vectors.dense([-7.2, 1.0, -3.2]))])
df = data.map(lambda r: FeatureRow(*r)).toDF()

vector_udf = udf(lambda vector: sum(vector), DoubleType())

df.withColumn('feature_sums', vector_udf(df.features)).first()

这会失败并显示以下堆栈跟踪:

Py4JJavaError: An error occurred while calling z:org.apache.spark.api.python.PythonRDD.collectAndServe.
: org.apache.spark.SparkException: Job aborted due to stage failure: Task 5 in stage 31.0 failed 1 times, most recent failure: Lost task 5.0 in stage 31.0 (TID 95, localhost): org.apache.spark.api.python.PythonException: Traceback (most recent call last):
  File "/Users/colin/src/spark/python/lib/pyspark.zip/pyspark/worker.py", line 111, in main
    process()
  File "/Users/colin/src/spark/python/lib/pyspark.zip/pyspark/worker.py", line 106, in process
    serializer.dump_stream(func(split_index, iterator), outfile)
x1  File "/Users/colin/src/spark/python/lib/pyspark.zip/pyspark/serializers.py", line 263, in dump_stream
    vs = list(itertools.islice(iterator, batch))
  File "/Users/colin/src/spark/python/pyspark/sql/functions.py", line 469, in <lambda>
    func = lambda _, it: map(lambda x: f(*x), it)
  File "/Users/colin/pokitdok/spark_mapper/spark_mapper/filters.py", line 143, in <lambda>
TypeError: unsupported operand type(s) for +: 'int' and 'NoneType'

查看传递给 UDF 的内容,似乎有些奇怪。传递的参数应该是 Vector,但它会传递一个 Python 元组,如下所示:

(1, None, None, [9.7, 1.0, -3.2])

难道不能在 Vectors 的 DataFrame 列上使用 UDF 吗?

编辑

所以邮件列表中指出这是known issue。将接受来自@hyim 的答案,因为它确实为密集向量提供了临时解决方法。

【问题讨论】:

    标签: apache-spark apache-spark-sql pyspark


    【解决方案1】:

    在 spark-sql 中,向量被处理为(类型、大小、索引、值)元组。

    您可以在带有 pyspark 的向量上使用 udf。只需修改一些代码以使用向量类型的值。

    vector_udf = udf(lambda vector: sum(vector[3]), DoubleType())
    
    df.withColumn('feature_sums', vector_udf(df.features)).first()
    

    https://github.com/apache/spark/blob/master/mllib/src/main/scala/org/apache/spark/mllib/linalg/Vectors.scala

    【讨论】:

    • 所以vector[3]中的对象是一个python列表而不是pyspark.mllib.linalg.DenseVector。我想这取决于我是否将其转换为 Vector 类型?
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